Papers

• Graffelman, J. (2010) The number of markers in the HapMap project: some notes on Chi-square and Exact tests for Hardy-Weinberg equilibrium. The American Journal of Human Genetics. 86(85): 813-823. DOI: 10.1016/j.ajhg.2009.11.019 See also the related software.
  
• Graffelman, J. and Morales-Camarena, J. (2008) Graphical tests for Hardy-Weinberg Equilibrium based on the ternary plot. Human Heredity 65(2): 77-84. doi:10.1159/000108939 See also the related software.
  
• Graffelman, J., Balding, D.J., Gonzalez-Neira, A., and Bertranpetit, J. (2007) Variation in Estimated Recombination Rates across Human Populations. Human Genetics 122(3-4): 301-310. doi:10.1007/s00439-007-0391-6
  
• Graffelman, J. and van Eeuwijk, F.A. (2005) Calibration of multivariate scatter plots for exploratory analysis of relations within and between sets of variables in genomic research. Biometrical Journal 47(6): 863-879.  doi:10.1002/bimj.200510177 See also the related software.
  
• Graffelman, J. (2005) Enriched biplots for canonical correlation analysis. Journal of Applied Statistics 32(2): 173-188. doi:10.1080/02664760500054202
  
• Graffelman, J. and Tuft, R. (2004) Site scores and conditional biplots in canonical correspondence analysis. Environmetrics 15(1): 67-80. doi:10.1002/env.629
  
• Graffelman, J. and Aluja-Banet, T. (2003) Optimal Representation of Supplementary Variables in Biplots from Principal Component Analysis and Correspondence Analysis. Biometrical Journal 45(4): 491-509.   doi:10.1002/bimj.200390027
• Graffelman, J. (2001) Quality Statistics in Canonical Correspondence Analysis. Environmetrics 12(5): 485-497. doi:10.1002/env.481
  

Co-authored Papers

• Elena Bosch, E., Laayouni, H., Morcillo-Suarez, C., Casals, F., Moreno-Estrada, A., Ferrer-Admetlla, A., Gardner, M., Rosa, A., Navarro, A., Comas, D., Graffelman, J., Calafell, F., Bertranpetit, J. (2009) Decay of linkage disequilibrium within genes across HGDP-CEPH human samples: most population isolates do not show increased LD.BMC Genomics 19:338. doi:10.1186/1471-2164-10-338
  
• Laayouni, H., Montanucci, L., Sikora, M., Mele, M., Dall'Olio, G.M., Lorente-Galdos, B., McGee, K.M., Graffelman, J., Awadalla, J.P., Bosch, E., Comas, D., Navarro, A., Calafell, F., Casals, F., Bertranpetit, J. (2011) Similarity in recombination rate estimates highly correlates with genetic differentiation in humans. PLoS ONE 6(3): e17913. doi:10.1371/journal.pone.0017913
  

Chapters in books

• Graffelman, J. (2011) A universal procedure for biplot calibration. In Ingrassia, S. Et al. (eds.) New Perspectives in Statistical Modeling and Data Analysis, Studies in Classification, Data Analysis and Knowledge organization. Springer-Verlag Berlin Heidelberg. Pages 195-202. doi:10.1007/978-3-642-11363-5_22 ISBN 978-3-642-11362-8.
• Graffelman, J. and Egozcue, J. J. (2011) Hardy-Weinberg equilibrium: a nonparametric compositional approach. In Pawlowsky-Glahn, V. and Buccianti A., editors, Compositional Data Analysis: Theory and Applications, pages 208-217, John Wiley & Sons, Ltd.
• Graffelman, J. (2001) Factor Analysis. In El-Shaarawi, A.H. and Piegorsch, W. W., editors, Encyclopedia of Environmetrics. Volume 2, pages 763-767, Chichester. John Wiley & Sons, Ltd.